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In Silico Evaluation of Antibacterial Potential of Ceiba Pentandra (L.) Gaertn. Phytoconstituents Against Skin Infection-associated Pathogens

Received: 29 September 2026     Accepted: 9 October 2026     Published: 29 October 2026
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Abstract

In particular, the emergence of multidrug-resistant (MDR) bacterial pathogens has complicated the management of skin and wound infections and has increased the need for alternative sources of antibacterial molecules. The plant Ceiba pentandra (L.) Gaertn., is one of the notable members of the family Malvaceae, and has been traditionally used for several of its ethnomedicinal properties, including management of skin infections. The present study aimed to explore the in silico antibacterial potential against E. coli and S. aureus. Physicochemical and drug-likeness assessments were performed on phytoconstituents obtained with C. pentandra from the IMPPAT database. Computational platforms were used to predict ADMET and toxicity profiles. The Lipinski RO5-compliant compounds were further investigated for molecular docking against E. coli DNA gyrase (PDB ID: 1KZN) and S. aureus DNA gyrase (PDB ID: 3G7B). Among the compounds, kaempferol showed the best binding with predicted binding energies of -8.0 kcal/mol and -7.8 kcal/mol with E. coli DNA gyrase and S. aureus DNA gyrase, respectively. The results indicated that C. pentandra contains phytoconstituents with potential for strong interactions with bacterial DNA gyrase, with kaempferol as the most notable constituent. The study provides a computational basis for future study of C. pentandra-derived compounds against bacterial pathogens associated with skin infections.

Published in American Journal of Science, Engineering and Technology (Volume 11, Issue 4)

This article belongs to the Special Issue Advances in Translational Research, Biotechnology, and Sustainable Bio-Innovations

DOI 10.11648/j.ajset.20261104.37
Page(s) 475-484
Creative Commons

This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.

Copyright

Copyright © The Author(s), 2026. Published by Science Publishing Group

Keywords

DNA Gyrase, Phytocompounds, ADMET, Ceiba Pentandra, Skin Infection, Molecular Docking

References
[1] Elumalai, Nikhitha Mathangi, Adarsh Didala, Raju Kasarla, & Yetcharla Venkatesh. (2012). A Review on Ceiba pentandra and its medicinal features. Asian Journal of Pharm. Tech., 83-86.
[2] Chan, E. W. C., Yeong, S. W., Wong, C. W., Soo, O. Y. M., Phua, A. C. Y., & Ng, Y. K. (2022). Ceiba pentandra (L.) Gaertn.: An overview of its botany, uses, reproductive biology, pharmacological properties, and industrial potentials. Journal of Applied Biology & Biotechnology.
[3] Dighe, S. N., & Collet, T. A. (2020). Recent advances in DNA gyrase-targeted antimicrobial agents. European Journal of Medicinal Chemistry, 199, 112326.
[4] [Fang, Y., Lu, Y., Zang, X., Wu, T., Qi, X., Pan, S., & Xu, X. (2016). 3D-QSAR and docking studies of flavonoids as potent Escherichia coli inhibitors. Scientific Reports, 6(1), 23634.
[5] Ivanović, V., Rančić, M., Arsić, B., & Pavlović, A. (2020). Lipinski’s rule of five, famous extensions and famous exceptions. Popular Scientific Article, 3(1), 171-177.
[6] Kumar, S., Mahato, R. P., Ch, S., & Kumbham, S. (2025). Current strategies against multidrug-resistant Staphylococcus aureus and advances toward future therapy. The Microbe, 6, 100281.
[7] Mejari, M., Suresh, N., Vishe, B., Raza, A., Jangam, S., & Choure, R. (2026). In-silico identification of Kalanchoe pinnata phytochemicals as potential natural inhibitors of Escherichia coli dihydrofolate reductase. In Silico Research in Biomedicine, 2, 100473. |
[8] Monk, E. J. M., Jones, T. P. W., Bongomin, F., Kibone, W., Nsubuga, Y., Ssewante, N., Muleya, I., Nsenga, L., Rao, V. B., & van Zandvoort, K. (2024). Antimicrobial resistance in bacterial wound, skin, soft tissue and surgical site infections in Central, Eastern, Southern and Western Africa: A systematic review and meta-analysis. PLOS Global Public Health, 4(4), e0003077.
[9] Nazir, A., Nazir, A., Zuhair, V., Aman, S., Sadiq, S. U. R., Hasan, A. H., Tariq, M., Rehman, L. U., Mustapha, M. J., & Bulimbe, D. B. (2025). The Global Challenge of Antimicrobial Resistance: Mechanisms, Case Studies, and Mitigation Approaches. Health Science Reports, 8(7).
[10] Pakeeraiah, K., Swain, P. P., Sahoo, A., Panda, P. K., Mahapatra, M., Mal, S., Sahoo, R. K., Sahu, P. K., & Paidesetty, S. K. (2024). Multimodal antibacterial potency of newly designed and synthesized Schiff’s/Mannich based coumarin derivatives: potential inhibitors of bacterial DNA gyrase and biofilm production. RSC Advances, 14(43), 31633-31647.
[11] Parameswaran, S., Natarajan, S. B., Shanmugam, N., & Kalusalingam, A. (2026). Plant Secondary Metabolites as Next-Generation Antibiofilm and Antimicrobial Agents: Mechanisms, Synergistic Effects, and Clinical Translation. Drugs and Drug Candidates, 5(3), 38.
[12] Sahoo, C. R., Paidesetty, S. K., Sarathbabu, S., Dehury, B., Senthil Kumar, N., & Padhy, R. N. (2022). Molecular dynamics simulation, synthesis and topoisomerase inhibitory actions of vanillin derivatives: a systematic computational structural integument. Journal of Biomolecular Structure and Dynamics, 40(22), 11653-11663.
[13] [Swain, P., Kumari, R., Biswas, S., Misra, N., Kushwaha, G. S., & Suar, M. (2025). Plant natural products for antibacterial drug development against ESKAPE pathogens. The Microbe, 9, 100610.
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[15] Wu, T., Zang, X., He, M., Pan, S., & Xu, X. (2013). Structure-Activity Relationship of Flavonoids on Their Anti-Escherichia coli Activity and Inhibition of DNA Gyrase. Journal of Agricultural and Food Chemistry, 61(34), 8185-8190.
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    Mohapatra, P., Das, M., Kumar, M. (2026). In Silico Evaluation of Antibacterial Potential of Ceiba Pentandra (L.) Gaertn. Phytoconstituents Against Skin Infection-associated Pathogens. American Journal of Science, Engineering and Technology, 11(4), 475-484. https://doi.org/10.11648/j.ajset.20261104.37

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    ACS Style

    Mohapatra, P.; Das, M.; Kumar, M. In Silico Evaluation of Antibacterial Potential of Ceiba Pentandra (L.) Gaertn. Phytoconstituents Against Skin Infection-associated Pathogens. Am. J. Sci. Eng. Technol. 2026, 11(4), 475-484. doi: 10.11648/j.ajset.20261104.37

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    AMA Style

    Mohapatra P, Das M, Kumar M. In Silico Evaluation of Antibacterial Potential of Ceiba Pentandra (L.) Gaertn. Phytoconstituents Against Skin Infection-associated Pathogens. Am J Sci Eng Technol. 2026;11(4):475-484. doi: 10.11648/j.ajset.20261104.37

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  • @article{10.11648/j.ajset.20261104.37,
      author = {Pallabi Mohapatra and Manoja Das and Manish Kumar},
      title = {In Silico Evaluation of Antibacterial Potential of Ceiba Pentandra (L.) Gaertn. Phytoconstituents Against Skin Infection-associated Pathogens},
      journal = {American Journal of Science, Engineering and Technology},
      volume = {11},
      number = {4},
      pages = {475-484},
      doi = {10.11648/j.ajset.20261104.37},
      url = {https://doi.org/10.11648/j.ajset.20261104.37},
      eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ajset.20261104.37},
      abstract = {In particular, the emergence of multidrug-resistant (MDR) bacterial pathogens has complicated the management of skin and wound infections and has increased the need for alternative sources of antibacterial molecules. The plant Ceiba pentandra (L.) Gaertn., is one of the notable members of the family Malvaceae, and has been traditionally used for several of its ethnomedicinal properties, including management of skin infections. The present study aimed to explore the in silico antibacterial potential against E. coli and S. aureus. Physicochemical and drug-likeness assessments were performed on phytoconstituents obtained with C. pentandra from the IMPPAT database. Computational platforms were used to predict ADMET and toxicity profiles. The Lipinski RO5-compliant compounds were further investigated for molecular docking against E. coli DNA gyrase (PDB ID: 1KZN) and S. aureus DNA gyrase (PDB ID: 3G7B). Among the compounds, kaempferol showed the best binding with predicted binding energies of -8.0 kcal/mol and -7.8 kcal/mol with E. coli DNA gyrase and S. aureus DNA gyrase, respectively. The results indicated that C. pentandra contains phytoconstituents with potential for strong interactions with bacterial DNA gyrase, with kaempferol as the most notable constituent. The study provides a computational basis for future study of C. pentandra-derived compounds against bacterial pathogens associated with skin infections.},
     year = {2026}
    }
    

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  • TY  - JOUR
    T1  - In Silico Evaluation of Antibacterial Potential of Ceiba Pentandra (L.) Gaertn. Phytoconstituents Against Skin Infection-associated Pathogens
    AU  - Pallabi Mohapatra
    AU  - Manoja Das
    AU  - Manish Kumar
    Y1  - 2026/10/29
    PY  - 2026
    N1  - https://doi.org/10.11648/j.ajset.20261104.37
    DO  - 10.11648/j.ajset.20261104.37
    T2  - American Journal of Science, Engineering and Technology
    JF  - American Journal of Science, Engineering and Technology
    JO  - American Journal of Science, Engineering and Technology
    SP  - 475
    EP  - 484
    PB  - Science Publishing Group
    SN  - 2578-8353
    UR  - https://doi.org/10.11648/j.ajset.20261104.37
    AB  - In particular, the emergence of multidrug-resistant (MDR) bacterial pathogens has complicated the management of skin and wound infections and has increased the need for alternative sources of antibacterial molecules. The plant Ceiba pentandra (L.) Gaertn., is one of the notable members of the family Malvaceae, and has been traditionally used for several of its ethnomedicinal properties, including management of skin infections. The present study aimed to explore the in silico antibacterial potential against E. coli and S. aureus. Physicochemical and drug-likeness assessments were performed on phytoconstituents obtained with C. pentandra from the IMPPAT database. Computational platforms were used to predict ADMET and toxicity profiles. The Lipinski RO5-compliant compounds were further investigated for molecular docking against E. coli DNA gyrase (PDB ID: 1KZN) and S. aureus DNA gyrase (PDB ID: 3G7B). Among the compounds, kaempferol showed the best binding with predicted binding energies of -8.0 kcal/mol and -7.8 kcal/mol with E. coli DNA gyrase and S. aureus DNA gyrase, respectively. The results indicated that C. pentandra contains phytoconstituents with potential for strong interactions with bacterial DNA gyrase, with kaempferol as the most notable constituent. The study provides a computational basis for future study of C. pentandra-derived compounds against bacterial pathogens associated with skin infections.
    VL  - 11
    IS  - 4
    ER  - 

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